WebOct 1, 2024 · The predominantely star-like shape with little reticulation is in principle consistent with a clonally reproducing population. However, the high effective population size, the rapid decay in linkage disequilibrium and the pairwise homoplasy index (Phi; P<0.0001) show strong signatures of recombination WebJan 25, 2024 · Indeed, the pairwise homoplasy index (PHI) test for recombination was highly significant (p value <0.001) when we performed split-decomposition network analysis using Split tree (Huson 1998). This indicates conflicting phylogenetic signals that are possibly attributed to recombination among viral genomes.
Phylogenetic assessment and taxonomic revision of
WebPHI test and other tests of recombination. The PhiPack software package implements a few tests for recombination and can produce refined incompatibility matrices as well. … WebOct 6, 2024 · A pairwise homoplasy index (PHI) test revealed no significant recombination event between Cytospora phitsanulokensis and the closely related taxa, C. acaciae, C. italica and C. magnoliae . There was also no significant recombination among Cytospora chiangmaiensis, C. shoreae, C. thailandica, C. diopuiensis and C. xinglongensis . crowds gatchaman
Use of Whole-Genus Genome Sequence Data To Develop a …
WebJun 14, 2024 · Intra and inter-continental migration was predicted between Europe and South America, likely associated with the movement of contaminated germplasm. Low clonality and evidence of genetic recombination were detected from the analysis of linkage disequilibrium and the pairwise homoplasy index (PHI) test for clonality. WebOct 22, 2014 · START was also used to determine that the GC content in the MLST genes was comparable to that of the whole-genome GC content. To detect recombination within the Y. enterocolitica MLST data, SplitsTree 4.2 was used to compute the pairwise homoplasy index (PHI). WebFeb 28, 2024 · Twelve representative strains of Periconia byssoides, P. celtidis, P. pseudobyssoides and P. salina were implied in a pairwise homoplasy index (PHI) test for … crowds gif